These figures represents a taxonomy of snapshots of the HIV's ENV protein on 5 patients. Samples contain the code of the patient A, B, C, D or E, the sampling date, in the format DDMMYY, and an index number. The pairwise distances were computed using a distance function and model describe here. The actual figures were inferred from the distance matrix (that contains all pairwise distances) by standard tree or network drawing programs like splitsTree (www.splitstree.org). to obtain a NJ tree (SVG 61Kb, PDF 6Kb) and a NJ network (SVG 2.5Mb, PDF 35Kb). Since the figures are a little involved, they may not be very clear. If needed, here is the distance matrix used to infer the trees or networks.
All patients
- Complete NJ-tree (SVG 61Kb,
PDF 6Kb) and NJ-net
(SVG 2.5Mb,
PDF 35Kb)
- Complete NJ-net with renamed labels to better show the segregation of
patient samples. ( PDF 49Kb,
SVG 3.8Mb)
NJ-nets for each patient
- Patient A(PDF 8Kb, SVG 120 Kb)
- Patient B (PDF 14Kb, SVG 240Kb)
- Patient C (PDF 4Kb, SVG 57Kb)
- Patient D (PDF 5Kb, SVG 70Kb)
- Patient E (PDF 7Kb, SVG 116Kb)
Pair NJ-nets
- Patient A-B (PDF 27Kb, SVG 807Kb)
- Patient A-C (PDF 13Kb, SVG 339Kb)
- Patient A-D (PDF 13Kb, SVG 239Kb)
- Patient A-E (PDF 21Kb, SVG 481Kb)
Renamed labels to emphasize clone nr. and date
- Patient A (TREE PDF 2.7Kb, NET PDF 7.1Kb)
- Patient B (TREE PDF 3.8Kb, NET PDF 24Kb)
- Patient C (TREE PDF 2.2Kb, NET PDF 3.9Kb)
- Patient D (TREE PDF 2.2Kb, NET PDF 4.7Kb)
- Patient E (TREE PDF 2.5Kb, NET PDF 6.3Kb)
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